数据与分析类 Claude Code 技能与 MCP 服务器
discernment-nudge
After you give a substantive answer or draft that the user may act on — advice or recommendations, drafted artifacts such as goals, plans, pitches, proposals, or emails, estimates or projections, analysis or interpretation of data, factual claims they may rely on, or a multi-step argument — invoke this skill BEFORE finalizing your reply and then, if it applies, append 2-3 short follow-up questions
paperclip-dev-workspace-run-verify-fix
Run, verify, reseed, and repair Paperclip isolated dev workspace services. Use when asked to start or fix a managed project/worktree service and prove health, login readiness, cloned data, runtime visibility, and correct port ownership.
how-it-works
Explain how claude-mem captures observations, when memory injection kicks in, and where data lives. Use when the user asks "how does claude-mem work?" or "what is this thing doing?".
archify
Create validated architecture, workflow, sequence, data-flow, lifecycle/state, ERD, class, tree, timeline, and waterfall diagrams as explorable standalone HTML with dark/light themes, motion and image/SVG/WebM export. Accept requirements or Mermaid; inspect repository evidence for code-backed diagrams. Use when visualizing systems, API calls, pipelines, schemas, histories, timings, or everyday ste
13c-metabolic-flux
Estimates intracellular metabolic fluxes from steady-state carbon-13 isotope-tracing measurements using validated atom maps, mfapy isotope simulation, constrained multistart fitting, and flux-profile diagnostics. Use for 13C-MFA, carbon tracing, mass isotopomer distributions (MDVs/MIDs), positional isotopomers, parallel tracer experiments, and determining whether labeling data constrain a pathway
anndata
Handles annotated matrices in single-cell analysis, .h5ad and Zarr files, and integration with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
arbor
Applies Arbor Hypothesis Tree Refinement to research artifacts with repeatable evaluators, including model training, agent harnesses, data synthesis and benchmark optimization. Uses persistent hypotheses, isolated experiments, evidence propagation and held-out candidate comparison for multi-experiment research runs. Includes a standard-library state manager and guidance for the RUC-NLPIR Arbor CLI
arboreto
Infers candidate gene regulatory networks from bulk or single-cell expression data using AertsLab Arboreto GRNBoost2 and GENIE3. Use for transcription factor-target association ranking, compatible Dask execution, sparse expression inputs, and network stability checks.
astropy
Core Python library for astronomy and astrophysics workflows that need Astropy APIs, including units/quantities, coordinates, FITS I/O, tables, time systems, WCS, and cosmology. Use when implementing or debugging astronomical data analysis code with Astropy.
benchling-integration
Benchling Python SDK and REST API integration for registry entities, inventory, ELN entries, workflows, Benchling Apps, and Data Warehouse queries. Use when automating lab data with benchling-sdk or the v2 API.
bids
Organizes, queries, validates, and converts Brain Imaging Data Structure (BIDS) datasets. Supports organizing neuroscience and biomedical data (MRI, EEG, MEG, iEEG, PET, microscopy, NIRS, motion capture, EMG, MR spectroscopy, behavioral), querying BIDS layouts, validating compliance, converting DICOM to BIDS, writing metadata sidecars, or creating BIDS derivatives.
bulk-rnaseq
Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2.
cellxgene-census
Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local singl
apollo
Prospect, enrich leads, load outreach sequences, and query sales analytics with Apollo.io — one-click MCP server integration for Claude Code and Cowork.
llm-finetuning
Eval-gated LLM fine-tuning lifecycle (LoRA/QLoRA, DPO, GRPO/RLVR, vision SFT, quantized export). Use when fine-tuning an open-weights model end-to-end: building the eval harness first, selecting method and model, preparing data, training with Unsloth or TRL, gating checkpoints, and exporting GGUF/FP8.
agent-orchestration
Multi-agent system optimization, agent improvement workflows, and context management
context-management
Context persistence, restoration, and long-running conversation management
machine-learning-ops
ML model training pipelines, hyperparameter tuning, model deployment automation, experiment tracking, and MLOps workflows
apify-mcp-server
Extract data from any website with thousands of scrapers, crawlers, and automations on Apify Store ⚡
Jitsu
Manage Jitsu data pipelines: destinations, streams, connections, functions, live events.
mcp
Securely access and manage FHIR healthcare data stored in Medplum.