bulk-rnaseq

Claude Code skillNot tested by us

Prepares bulk RNA-seq FASTQ, Salmon, STAR or featureCounts output for gene-level differential expression. Covers nf-core/rnaseq and standalone quantification, biological replication, strandedness, reference provenance, validated count assembly and a PyDESeq2 handoff. Use for FASTQ-to-counts analysis, nf-core/rnaseq configuration, STAR/Salmon quantification, or building a counts matrix for DESeq2.

Install

Copy the skill folder into your personal skills directory (or .claude/skills/ in a project):

git clone --depth 1 https://github.com/K-Dense-AI/claude-scientific-skills.git /tmp/claude-scientific-skills
cp -r /tmp/claude-scientific-skills/skills/bulk-rnaseq ~/.claude/skills/

Commands are derived from repository/registry metadata and have not been tested.

Details