cellprofiler

Claude Code skillNot tested by us

Runs reproducible CellProfiler microscopy pipelines for nuclear segmentation, cell counts, and per-object fluorescence measurements. Supports image/channel manifests, headless batch execution, segmentation overlays, and measurement QC for 2D fluorescence assays.

Install

Copy the skill folder into your personal skills directory (or .claude/skills/ in a project):

git clone --depth 1 https://github.com/K-Dense-AI/claude-scientific-skills.git /tmp/claude-scientific-skills
cp -r /tmp/claude-scientific-skills/skills/cellprofiler ~/.claude/skills/

Commands are derived from repository/registry metadata and have not been tested.

Details