cellxgene-census

Claude Code skillNot tested by us

Queries the CZ CELLxGENE Census programmatically for versioned public single-cell and spatial transcriptomics data. Use when you need population-scale cell metadata, gene expression slices, Census summary counts, source H5AD URIs/downloads, embeddings, spatial Census data, or reference atlas comparisons across organisms, tissues, diseases, assays, and cell types. For analyzing your own local singl

Install

Copy the skill folder into your personal skills directory (or .claude/skills/ in a project):

git clone --depth 1 https://github.com/K-Dense-AI/claude-scientific-skills.git /tmp/claude-scientific-skills
cp -r /tmp/claude-scientific-skills/skills/cellxgene-census ~/.claude/skills/

Commands are derived from repository/registry metadata and have not been tested.

Details